Knowledge Base Resources

• Carpentries.org

We teach foundational coding and data science skills to researchers worldwide.

• HPC University Resources

A comprehensive list of training resources from the HPC University. HPCU is a virtual organization whose primary goal is to provide a cohesive, persistent, and sustainable on-line environment to share educational and training materials for a continuum of high performance computing environments that span desktop computing capabilities to the highest-end of computing facilities offered by HPC centers.

• Relion Website

RELION (REgularised LIkelihood OptimisatioN, pronounced rely-on) is a stand-alone software package developed by Sjors Scheres' group at the MRC Laboratory of Molecular Biology. It employs an empirical Bayesian approach for electron cryo-microscopy (cryo-EM) structure determination, specifically for refining multiple 3D reconstructions or 2D class averages.

• Open OnDemand Documentation repo

This is the main documentation repo for the Open OnDemand Portal which enables researchers to access HPC resources from a familiar web interface.

• TrustedCI Open Ondemand 2021 Audit

Open OnDemand has been audited by Trusted CI, the NSF Cybersecurity Center of Excellence, to enhance its security and maintain its status as a trusted platform, with the latest engagement report contributing to ongoing security improvements. Trusted CI's mission is to provide the NSF community with a clear understanding of cybersecurity, its significance to computational science, and the necessary steps to establish and sustain an effective cybersecurity program.

• CryoSPARC Website

CryoSPARC is a comprehensive software platform for cryo-EM data processing that enables high-resolution structure determination of biological macromolecules. Core Features: Automated Particle Picking, 3D Heterogeneity Analysis, Ab-Initio 3D Reconstruction, High-Resolution Refinement, Model Building & Validation